toupy package¶
Subpackages¶
- toupy.io package
- Submodules
- toupy.io.dataio module
- toupy.io.filesrw module
convert16bitstiff()convert8bitstiff()convertimageto16bits()convertimageto8bits()create_paramsh5()crop_array()load_paramsh5()memmap_volfile()read_cxi()read_edf()read_ptyr()read_recon()read_theta_raw()read_theta_recon()read_tiff()read_tiff_info()read_volfile()write_edf()write_paramsh5()write_tiff()write_tiffmetadata()
- toupy.io.h5chunk_shape_3D module
- toupy.registration package
- Submodules
- toupy.registration.cone_registration module
ConeBeamRegistrationConeBeamRegistration.geometryConeBeamRegistration.align_horizontal()ConeBeamRegistration.align_horizontal_from_parallel()ConeBeamRegistration.align_vertical()ConeBeamRegistration.align_vertical_cone()ConeBeamRegistration.estimate_cor()ConeBeamRegistration.estimate_geometry()ConeBeamRegistration.rebin_to_parallel()
rebin_fan_to_parallel()
- toupy.registration.registration module
- registration_gd.py
alignprojections_horizontal()alignprojections_vertical()center_of_mass_stack()compute_aligned_horizontal()compute_aligned_sino()compute_aligned_stack()estimate_rot_axis()oneslicefordisplay()refine_horizontalalignment()register_2Darrays()tomoconsistency_multiple()vertical_fluctuations()vertical_shift()
- toupy.registration.shift module
- toupy.resolution package
- Submodules
- toupy.resolution.FSC module
- toupy.resolution.FSCtools module
- toupy.resolution.MTF module
- toupy.resolution.decorr module
- toupy.resolution.localres module
LocalResolutionLocalResolution.resolution_mapLocalResolution.resolution_map_physLocalResolution.resolution_map_halfLocalResolution.resolution_map_phys_halfLocalResolution.sigma_noiseLocalResolution.freq_bandsLocalResolution.maskLocalResolution.resolution_medianLocalResolution.resolution_meanLocalResolution.resolution_stdLocalResolution.resolution_median_halfLocalResolution.resolution_mean_halfLocalResolution.resolution_std_halfLocalResolution.plot()
- toupy.restoration package
- Submodules
- toupy.restoration.GUI_tracker module
AmpTrackerPhaseTrackerPhaseTracker.add_mask()PhaseTracker.apply_all_masks()PhaseTracker.apply_mask()PhaseTracker.cmvmax()PhaseTracker.cmvmin()PhaseTracker.down()PhaseTracker.draw_mask()PhaseTracker.key_event()PhaseTracker.load_masks()PhaseTracker.mask_all()PhaseTracker.onclose()PhaseTracker.onscroll()PhaseTracker.play()PhaseTracker.remove_all_mask()PhaseTracker.remove_mask()PhaseTracker.remove_ramp()PhaseTracker.remove_rampall()PhaseTracker.save_masks()PhaseTracker.stop_play()PhaseTracker.submit()PhaseTracker.unwrapping_all()PhaseTracker.unwrapping_phase()PhaseTracker.up()PhaseTracker.update()
gui_plotamp()gui_plotphase()make_air_mask()
- toupy.restoration.derivativetools module
- toupy.restoration.phase_retrieval module
- toupy.restoration.ramptools module
- toupy.restoration.ring_correction module
- toupy.restoration.unwraptools module
- toupy.restoration.vorticestools module
- toupy.simulation package
- toupy.tomo package
- Submodules
- toupy.tomo.cone_projector module
- toupy.tomo.fdk module
- toupy.tomo.geometry module
ConeBeamGeometryConeBeamGeometry.magnificationConeBeamGeometry.effective_pixel_sizeConeBeamGeometry.SDDConeBeamGeometry.SODConeBeamGeometry.anglesConeBeamGeometry.det_pixel_sizeConeBeamGeometry.effective_pixel_sizeConeBeamGeometry.magnificationConeBeamGeometry.n_uConeBeamGeometry.n_vConeBeamGeometry.u_coords()ConeBeamGeometry.v_coords()ConeBeamGeometry.validate()
- toupy.tomo.iradon module
- toupy.tomo.radon module
- toupy.tomo.tomorecons module
- toupy.tomo.tv_recons module
- toupy.utils package
- Submodules
- toupy.utils.FFT_utils module
- toupy.utils.array_utils module
create_circle()create_mask_borders()crop()cropROI()fract_hanning()fract_hanning_pad()gauss_kern()hanning_apod1D()hanning_apodization()mask_borders()normalize_array()padarray_bothsides()polynomial1d()projectpoly1d()radtap()replace_bad()round_to_even()sharpening_image()smooth1d()smooth2d()smooth_image()sort_array()
- toupy.utils.converter_utils module
- toupy.utils.fit_utils module
- toupy.utils.funcutils module
checkhostname()deprecated()downloadURL()downloadURLfile()progress_bar()switchtqdmtqdm.__iter__()tqdm.clear()tqdm.close()tqdm.display()tqdm.external_write_mode()tqdm.format_dicttqdm.format_interval()tqdm.format_meter()tqdm.format_num()tqdm.format_sizeof()tqdm.get_lock()tqdm.monitortqdm.monitor_intervaltqdm.moveto()tqdm.pandas()tqdm.refresh()tqdm.reset()tqdm.set_description()tqdm.set_description_str()tqdm.set_lock()tqdm.set_postfix()tqdm.set_postfix_str()tqdm.status_printer()tqdm.unpause()tqdm.update()tqdm.wrapattr()tqdm.write()
- toupy.utils.plot_utils module